A B C D E F G H I J L M N O P Q R S T U V W X 

A

addAttachedGraph(String) - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Register an additional graph attached to the main transformed graph.
addToListNullProof(T, List<T>) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Add a value to the list given in parameter and return modified list; if list is null, create new instance.
addToSetNullProof(T, Set<T>) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Add a value to the set given in parameter and return modified set; if set is null, create new instance.
adjustTransactionIsolationLevel(int) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Adjust transaction isolation level.
adjustTransactionLevel(EnumLogLevel) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Adjust transaction logging level and auto commit.
aggregatedPublisherScoreGraphUri - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Name of a graph to put aggregated score to.
append(LoggingEvent) - Method in class cz.cuni.mff.odcleanstore.log4j.RollingFileAppender
If object is current odcs log4j thread RollingFileAppender, then append message to the log.
attachedGraph - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a data graph to its attached graphs added by transformers.

B

BackendConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Backend configuration.
BackendConfig(SparqlEndpointConnectionCredentials, SparqlEndpointConnectionCredentials, JDBCConnectionCredentials, JDBCConnectionCredentials, Integer) - Constructor for class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
booleanType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
boolFunction - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XPathFunctions
 

C

cardinality - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.OWL
 
CLEAN_DB_NAME - Static variable in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
Database-name prefix for configuration values related to the clean database.
close() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Closes the wrapped connection.
close() - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Close the wrapped statement.
closeQuietly() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Closes the wrapped connection without throwing an exception.
closeQuietly() - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Close the wrapped statement without throwing an exception.
coefficient - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Coefficient of a Quality Assessment rule.
commit() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Commit changes to the database.
Config - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates application configuration values.
ConfigGroup - Class in cz.cuni.mff.odcleanstore.configuration
An abstract class for all configuration groups.
ConfigGroup() - Constructor for class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
 
ConfigGroup.EnumDbConnectionType - Enum in cz.cuni.mff.odcleanstore.configuration
Type of database.
ConfigLoader - Class in cz.cuni.mff.odcleanstore.configuration
A globally accessible singleton Config instance.
ConfigurationException - Exception in cz.cuni.mff.odcleanstore.configuration.exceptions
 
ConfigurationException(String) - Constructor for exception cz.cuni.mff.odcleanstore.configuration.exceptions.ConfigurationException
Create a new instance.
ConflictResolutionConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Conflict-Resolution configuration.
ConflictResolutionConfig(Double, Double, Double, Double, Long) - Constructor for class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
ConnectionException - Exception in cz.cuni.mff.odcleanstore.connection.exceptions
Exception thrown when a connection to the database cannot be established.
ConnectionException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ConnectionException
Creates a new exception.
ConnectionException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ConnectionException
Creates a new exception.
ConnectionException(String) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ConnectionException
Creates a new exception.
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatBoolean
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatDouble
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatInteger
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatLong
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatString
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatURI
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatURL
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.FormatUUID
 
convertValue(String, String) - Method in class cz.cuni.mff.odcleanstore.configuration.formats.ParameterFormat
Converts the given String value of the given group/parameter to the represented format.
createConnection(JDBCConnectionCredentials) - Static method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Create a new connection and return its wrapper.
cz.cuni.mff.odcleanstore.configuration - package cz.cuni.mff.odcleanstore.configuration
Interface for the global configuration read from odcs.ini.
cz.cuni.mff.odcleanstore.configuration.exceptions - package cz.cuni.mff.odcleanstore.configuration.exceptions
 
cz.cuni.mff.odcleanstore.configuration.formats - package cz.cuni.mff.odcleanstore.configuration.formats
 
cz.cuni.mff.odcleanstore.connection - package cz.cuni.mff.odcleanstore.connection
Helper classes for working with connection to a Virtuoso database instance.
cz.cuni.mff.odcleanstore.connection.exceptions - package cz.cuni.mff.odcleanstore.connection.exceptions
 
cz.cuni.mff.odcleanstore.data - package cz.cuni.mff.odcleanstore.data
 
cz.cuni.mff.odcleanstore.log4j - package cz.cuni.mff.odcleanstore.log4j
 
cz.cuni.mff.odcleanstore.model - package cz.cuni.mff.odcleanstore.model
 
cz.cuni.mff.odcleanstore.shared - package cz.cuni.mff.odcleanstore.shared
Shared definitions and utility classes.
cz.cuni.mff.odcleanstore.shared.util - package cz.cuni.mff.odcleanstore.shared.util
 
cz.cuni.mff.odcleanstore.transformer - package cz.cuni.mff.odcleanstore.transformer
Interface definitions for named graph transformers.
cz.cuni.mff.odcleanstore.vocabulary - package cz.cuni.mff.odcleanstore.vocabulary
Classes with constants objects representing classes and properties defined in well known ontologies.

D

DatabaseException - Exception in cz.cuni.mff.odcleanstore.connection.exceptions
Exception thrown when a database error occurs.
DatabaseException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.DatabaseException
Creates a new exception.
DatabaseException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.DatabaseException
Creates a new exception.
DatabaseException(String) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.DatabaseException
Creates a new exception.
dataBaseUrl - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Base for relative URI in input data.
dataGraphUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of named graphs where incoming data are stored.
DataNormalizationConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Data Normalization transformer configuration.
DataNormalizationConfig() - Constructor for class cz.cuni.mff.odcleanstore.configuration.DataNormalizationConfig
 
date - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.DC
A point or period of time associated with an event in the lifecycle of the resource.
dateFunction - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XPathFunctions
 
dateTimeType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
dateType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
DAY_HOURS - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Number of hours in a day.
DC - Class in cz.cuni.mff.odcleanstore.vocabulary
DCMI Metadata Terms vocabulary definitions.
debugTempGraphUriPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Prefix for temporary graphs created for rule debugging
decimalType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
DEFAULT_ENCODING - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Default encoding - UTF-8.
deleteGraph() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Marks the whole transformed graph (and the respective attached graphs) for deletion.
description - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.DC
Description.
DIRTY_DB_NAME - Static variable in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
Database-name prefix for configuration values related to the dirty database.
doubleType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
dropGraph(String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Drop graph from the database.

E

EngineConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Engine configuration.
EngineConfig(JDBCConnectionCredentials, JDBCConnectionCredentials, Long, Long, Long, Long, Long, String, String, UUID) - Constructor for class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
EnumDatabaseInstance - Enum in cz.cuni.mff.odcleanstore.data
Type of database instance.
EnumGraphState - Enum in cz.cuni.mff.odcleanstore.model
Contains symbolic names for id of Engine EN_INPUT_GRAPHS_STATES codebook table.
EnumLogLevel - Enum in cz.cuni.mff.odcleanstore.connection
Virtuoso logging level.
EnumPipelineErrorType - Enum in cz.cuni.mff.odcleanstore.model
Types of pipeline errors.
EnumTransformationType - Enum in cz.cuni.mff.odcleanstore.transformer
Type of strategy to use when an aggregation cannot be applied to a value.
ESCAPE_LITERAL_CHARS_TO_ESCAPE - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Pattern matching characters to be escaped in a literal when being escaped for a SPARQL query.
ESCAPE_LITERAL_CHARS_TO_REMOVE - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Pattern matching characters to be removed from a literal when being escaped for a SPARQL query.
escapeSPARQLLiteral(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Escapes a literal for use in a SPARQL query.
execute(String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes a general SQL/SPARQL query.
execute(String, Object...) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes a general SQL/SPARQL query.
executeAsk(String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes a SPARQL ASK query and returns the result.
executeNullsAllowed(String, Object...) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes a general SQL/SPARQL query with nulls object allowed.
executeSelect(String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes an SQL/SPARQL SELECT query and returns a wrapper for the result.
executeSelect(String, Object...) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Executes an SQL/SPARQL SELECT query and returns a wrapper for the result.
exportToTTL(File, String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Exports a named graph to the given file in TTL format.
extractUUID(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Extracts the UUID part from a data named graph URI.

F

FileUtils - Class in cz.cuni.mff.odcleanstore.shared.util
Utility methods for working with files.
FileUtils.DirectoryException - Exception in cz.cuni.mff.odcleanstore.shared.util
Error when working with a directory.
finalize() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Close connection on finalize().
floatType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
FormatBoolean - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to Integers.
FormatBoolean() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatBoolean
 
FormatDouble - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to Doubles.
FormatDouble() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatDouble
 
FormatInteger - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to Integers.
FormatInteger() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatInteger
 
FormatLong - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to Longs.
FormatLong() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatLong
 
FormatString - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to Strings (e.g.
FormatString() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatString
 
FormatURI - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to URIs.
FormatURI() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatURI
 
FormatURL - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to URLs.
FormatURL() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatURL
 
FormatUUID - Class in cz.cuni.mff.odcleanstore.configuration.formats
A formatter to convert String values to UUIDs.
FormatUUID() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.FormatUUID
 
fromId(int) - Static method in enum cz.cuni.mff.odcleanstore.model.EnumGraphState
 
fromId(int) - Static method in enum cz.cuni.mff.odcleanstore.model.EnumPipelineErrorType
 

G

generatedGraph - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property marking named graphs generated by ODCS (e.g.
generatedLinksGraphUriPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Prefix of named graphs where links generated by OI are placed.
getAgreeCoeficient() - Method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
getAttachedGraphNames() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns a collection of graphs attached to the transformed graph registered by TransformedGraph.addAttachedGraph(String) method.
getAutocommit() - Method in enum cz.cuni.mff.odcleanstore.connection.EnumLogLevel
Returns autocommit settings for the selected transaction log level.
getBackendGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns backend configuration.
getBigDecimal(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a BigDecimal.
getBigDecimal(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a BigDecimal.
getBits() - Method in enum cz.cuni.mff.odcleanstore.connection.EnumLogLevel
Returns the corresponding bits parameter for Virtuoso log_level() function.
getCleanDatabaseCredentials() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformationContext
Reference to the clean database.
getCleanDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
getCleanDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getCleanDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
 
getCleanDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getCleanDBSparqlConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
getCleanDBSparqlConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
 
getCleanImportExportDir() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getConfig() - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigLoader
Returns the parsed configuration instance.
getConfigPrefix() - Method in enum cz.cuni.mff.odcleanstore.configuration.ConfigGroup.EnumDbConnectionType
 
getConflictResolutionGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns CR configuration.
getConnectionString() - Method in class cz.cuni.mff.odcleanstore.connection.JDBCConnectionCredentials
Returns the JDBC connection string.
getCurrentResultSet() - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the current result as a ResultSet object.
getDataNormalizationGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns DN configuration.
getDebugDirectoryPath() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getDirtyDatabaseCredentials() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformationContext
Reference to the dirty database, i.e.
getDirtyDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
getDirtyDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getDirtyDBJDBCConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getDirtyDBSparqlConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
getDirtyDBSparqlConnectionCredentials() - Method in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
 
getDirtyImportExportDir() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getDouble(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a double.
getDouble(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a double.
getEndpointURL() - Method in class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
 
getEngineGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns engine configuration.
getEngineUuid() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getGmailAddress() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getGmailPassword() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getGraphId() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns the unique identifier of the transform named graph in ODCS.
getGraphName() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns URI of the transformed ("payload") named graph.
getImportExportTmpFile(VirtuosoConnectionWrapper, EnumDatabaseInstance) - Static method in class cz.cuni.mff.odcleanstore.data.GraphLoaderUtils
Returns unique temporary file in import/export directory.
getInputWSGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns input webservice configuration.
getInt(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a String.
getInt(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a String.
getJavaDate(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a java Date.
getJavaDate(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a java Date.
getKeywordPath() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getLookForGraphInterval() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getMaxDateDifference() - Method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
getMaxQueryResultSize() - Method in class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
 
getMetadataGraphName() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns URI of the named graph containing OCDS metadata about the transformed graph.
getMetadataPath() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getNamedGraphPath() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getNamedGraphScoreWeight() - Method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
getNamedGraphsPrefix() - Method in class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
 
getNamespace() - Method in class cz.cuni.mff.odcleanstore.data.RDFprefix
Returns the represented namespace.
getNode(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a Node.
getNode(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a Node.
getNString(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a java String.
getNString(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a java String.
getObjectIdentificationConfig() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns OI configuration.
getOutputWSGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns output webservice configuration.
getOutputWSHost() - Method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
getPassword() - Method in class cz.cuni.mff.odcleanstore.connection.JDBCConnectionCredentials
Returns the password.
getPassword() - Method in class cz.cuni.mff.odcleanstore.connection.SparqlEndpointConnectionCredentials
Returns the SPARQL endpoint password.
getPort() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getPrefixId() - Method in class cz.cuni.mff.odcleanstore.data.RDFprefix
Returns the prefix id.
getProvenanceMetadataGraphName() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns URI of the named graph containing provenance metadata about the transformed graph (given to Input Webservice).
getPublisherScoreWeight() - Method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
getQualityAssessmentGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns QA configuration.
getQueryExecutionGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns QE configuration.
getQueryTimeout() - Method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
 
getRecoveryCrashPenalty() - Method in class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
 
getResultDataURIPrefix() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getResultDataURIPrefix() - Method in class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
 
getScoreIfUnknown() - Method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
 
getSecondCrashPenalty() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getServerRoot() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Returns Virtuoso server working directory.
getShutdownTimeout() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getStartupTimeout() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getStateToDbWritingInterval() - Method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
 
getString(String) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a String.
getString(int) - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Retrieves the value of the designated column in the current row of this ResultSet object as a String.
getTableSuffix() - Method in enum cz.cuni.mff.odcleanstore.data.TableVersion
Returns suffix of the respective set of tables.
getTransformationType() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformationContext
Returns the type of transformation.
getTransformerConfiguration() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformationContext
Configuration file for the Transformer (obtained from ODCS database).
getTransformerDirectory() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformationContext
Returns reference to a directory reserved for the Transformer's needs.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.DC
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.OWL
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.RDF
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.RDFS
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.W3P
Returns the namespace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
Returns the namespaspace of the vocabulary.
getURI() - Static method in class cz.cuni.mff.odcleanstore.vocabulary.XPathFunctions
Returns the namespace of the vocabulary.
getUriPath() - Method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
getUrl() - Method in class cz.cuni.mff.odcleanstore.connection.SparqlEndpointConnectionCredentials
Returns the SPARQL endpoint URL.
getUsername() - Method in class cz.cuni.mff.odcleanstore.connection.JDBCConnectionCredentials
Returns the username.
getUsername() - Method in class cz.cuni.mff.odcleanstore.connection.SparqlEndpointConnectionCredentials
Returns the SPARQL endpoint username.
getVirtuosoURIForBlankNode(Node) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Return the URI identifying a blank node in Virtuoso.
getWebFrontendGroup() - Method in class cz.cuni.mff.odcleanstore.configuration.Config
Returns web frontend configuration.
getWrappedStatement() - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Returns the wrapped SQL statement.
GraphLoader - Class in cz.cuni.mff.odcleanstore.data
Utility class for loading serialized RDF data to Virtuoso.
GraphLoader(EnumDatabaseInstance) - Constructor for class cz.cuni.mff.odcleanstore.data.GraphLoader
Constructor.
GraphLoaderUtils - Class in cz.cuni.mff.odcleanstore.data
Utility methods for named graph import/export.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.QualityAssessmentConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
Prefix of names of properties belonging to this group.
GROUP_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
Prefix of names of properties belonging to this group.
guessLanguage(String) - Static method in class cz.cuni.mff.odcleanstore.data.GraphLoaderUtils
Guess serialization format of the given RDF data.

H

hasNext() - Method in class cz.cuni.mff.odcleanstore.shared.util.LimitedURIListBuilder
 
hiddenGraphPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Temporary prefix for new graphs in clean database.

I

IllegalParameterFormatException - Exception in cz.cuni.mff.odcleanstore.configuration.exceptions
 
IllegalParameterFormatException(String) - Constructor for exception cz.cuni.mff.odcleanstore.configuration.exceptions.IllegalParameterFormatException
Create a new instance.
importGraph(String, String) - Method in class cz.cuni.mff.odcleanstore.data.GraphLoader
Import graph serialized as N3 or RDF/XML to database into the given named graph.
InputWSConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates InputWS configuration.
InputWSConfig(URL, URL, Long) - Constructor for class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
 
insertedAt - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
 
insertedAt - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.W3P
The data was inserted at.
insertedBy - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
 
insertedBy - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.W3P
An Artifact was inserted to the data store by a User.
insertN3FromFile(File, String, String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Insert RDF data from file in N3 format to the database.
insertRdfXmlFromFile(File, String, String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Insert RDF data from file in rdfXml format to the database.
integerType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
intType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
isConfigLoaded() - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigLoader
Returns whether the configuration has been loaded already.
isDeleted() - Method in interface cz.cuni.mff.odcleanstore.transformer.TransformedGraph
Returns true iff the transformed graph has been marked for deletion.
isLatestUpdate - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property marking the latest version of an inserted named graph.
isLinkAttachedGraphs() - Method in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
 
isLinkWithinGraph() - Method in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
 
isNullOrEmpty(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Checks if a string is null or an empty string.
isPrefixedName(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Checks whether the given URI is a prefixed name.
isValidIRI(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Checks whether the given URI is a valid IRI.
isValidNamespacePrefix(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Checks whether the given string is a valid namespace prefix.
isValidSparqlVar(String) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Checks whether the given string is a valid SPARQL variable name.
iterator() - Method in class cz.cuni.mff.odcleanstore.shared.util.LimitedURIListBuilder
 

J

JDBC_DRIVER - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Jdbc driver class.
JDBCConnectionCredentials - Class in cz.cuni.mff.odcleanstore.connection
Encapsulates the coordinates of a JDBC connection.
JDBCConnectionCredentials(String, String, String) - Constructor for class cz.cuni.mff.odcleanstore.connection.JDBCConnectionCredentials
Creates a new instance.

L

label - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.RDFS
 
license - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.DC
A legal document giving official permission to do something with the resource.
license - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
 
LimitedURIListBuilder - Class in cz.cuni.mff.odcleanstore.shared.util
Builder of URI lists for use in SPARQL queries.
LimitedURIListBuilder(Iterable<String>, int) - Constructor for class cz.cuni.mff.odcleanstore.shared.util.LimitedURIListBuilder
Constructor.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.BackendConfig
Extracts Backend configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.Config
Extracts configuration values from the given Properties instance and returns them encapsulated in a Config instance.
load(File) - Static method in class cz.cuni.mff.odcleanstore.configuration.Config
Extracts configuration values from the given file and returns them encapsulated in a Config instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.ConflictResolutionConfig
Extracts Conflict-Resolution configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.DataNormalizationConfig
 
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.EngineConfig
Extracts Engine configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.InputWSConfig
Extracts InputWS configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
Extracts Object-Identification configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
Extracts OutputWS configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.QualityAssessmentConfig
 
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
Extracts Query-Execution configuration values from the given Properties instance.
load(Properties) - Static method in class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
loadConfig(String) - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigLoader
Loads and parses the contents of the configuration file into a Config instance.
loadConfig() - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigLoader
Loads and parses the contents of the configuration file into a Config instance.
loadJDBCConnectionCredentials(Properties, ConfigGroup.EnumDbConnectionType) - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
Extracts JDBC configuration values for the database given by its name from the given Properties instance.
loadParam(Properties, String, ParameterFormat<T>) - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
Loads the value of the parameter denoted by the represented group name and the given param-name and converts according to the given format.
loadPrefixes(JDBCConnectionCredentials) - Static method in class cz.cuni.mff.odcleanstore.shared.RDFPrefixesLoader
Loads RDF prefixes from Virtuoso DB.
loadPrefixes(JDBCConnectionCredentials) - Static method in class cz.cuni.mff.odcleanstore.shared.util.RDFPrefixesLoader
Loads RDF prefixes from Virtuoso DB.
loadSparqlEndpointConnectionCredentials(Properties, ConfigGroup.EnumDbConnectionType, boolean) - Static method in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
Extracts SPARQL Endpoint configuration values for the database given by its name from the given Properties instance.
longType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 

M

maxCardinality - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.OWL
 
metadataGraph - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a data graph to its metadata graph.
metadataGraphUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of named graphs where metadata about incoming named graphs are stored.
MILLISECONDS - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Milliseconds in a second.
minCardinality - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.OWL
 
ModelException - Exception in cz.cuni.mff.odcleanstore.connection.exceptions
Error related to database model.
ModelException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ModelException
Creates a new exception.
ModelException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ModelException
Creates a new exception.
ModelException(String) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.ModelException
Creates a new exception.

N

NAME_DELIMITER - Static variable in class cz.cuni.mff.odcleanstore.configuration.ConfigGroup
The delimiter between the group name and property name in the properties.
newGraphPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Temporary prefix for new graphs in clean database.
next() - Method in class cz.cuni.mff.odcleanstore.connection.WrappedResultSet
Moves the cursor forward one row from its current position.
next() - Method in class cz.cuni.mff.odcleanstore.shared.util.LimitedURIListBuilder
 
nextURI() - Method in interface cz.cuni.mff.odcleanstore.shared.UniqueURIGenerator
Return a next named graph unique at least within calls on each instance.
nextURI() - Method in class cz.cuni.mff.odcleanstore.shared.util.UUIDUniqueURIGenerator
 
nextURI() - Method in class cz.cuni.mff.odcleanstore.shared.UUIDUniqueURIGenerator
 
nullProofCompare(Comparable<T>, T) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Compare two values which may be null.
nullProofEquals(Object, Object) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Compare two values which may be null for equality.

O

ObjectIdentificationConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Object-Identification configuration.
ObjectIdentificationConfig(Boolean, Boolean, SparqlEndpointConnectionCredentials, SparqlEndpointConnectionCredentials) - Constructor for class cz.cuni.mff.odcleanstore.configuration.ObjectIdentificationConfig
 
ODCleanStoreException - Exception in cz.cuni.mff.odcleanstore.shared
A base class of all exceptions arising from ODCleanStore code.
ODCleanStoreException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.shared.ODCleanStoreException
Constructs a new exception with the given cause.
ODCleanStoreException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.shared.ODCleanStoreException
Constructs a new exception with the given message and cause.
ODCleanStoreException(String) - Constructor for exception cz.cuni.mff.odcleanstore.shared.ODCleanStoreException
Constructs a new exception with the given message.
ODCS - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions of ODCleanStore-specific properties and classes.
ODCSErrorCodes - Class in cz.cuni.mff.odcleanstore.shared
Error codes used in ODCleanStore.
ODCSInternal - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions of internal ODCleanStore URIs and URI prefixes.
ODCSUtils - Class in cz.cuni.mff.odcleanstore.shared
Various utility methods.
oldGraphPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Temporary prefix for old graphs in clean database.
ontologyGraphUriPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Prefix of named graphs where ontologies are stored.
ontologyMappingsGraphUriPrefix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Prefix of named graphs where ontology mappings are stored.
OutputWSConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates OutputWS configuration.
OutputWSConfig(URI, Integer, String, String, String, String) - Constructor for class cz.cuni.mff.odcleanstore.configuration.OutputWSConfig
 
OWL - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions for OWL.

P

ParameterFormat<T> - Class in cz.cuni.mff.odcleanstore.configuration.formats
An abstract class for all value formatters.
ParameterFormat() - Constructor for class cz.cuni.mff.odcleanstore.configuration.formats.ParameterFormat
 
ParameterNotAvailableException - Exception in cz.cuni.mff.odcleanstore.configuration.exceptions
 
ParameterNotAvailableException(String) - Constructor for exception cz.cuni.mff.odcleanstore.configuration.exceptions.ParameterNotAvailableException
Create a new instance.
popPreviousLogFile() - Static method in class cz.cuni.mff.odcleanstore.log4j.RollingFileAppender
Set odcs log4j RollingFileAppender for thread and its next child, which was hidden by previous calling of setNewLogFile method.
provenanceMetadataGraph - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a data graph to its provenance metadata graph.
provenanceMetadataGraphUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of named graphs where provenance metadata about incoming named graphs are stored.
publishedBy - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
 
publishedBy - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.W3P
Publisher of data.
publisherScore - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a publisher to its aggregated score.

Q

QARule - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Class of resources describing a Quality Assessment rule.
QE_CR_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DATABASE_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_AGGREGATION_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_DB_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_ES_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_MULTIVALUE_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_DEFAULT_CONFIG_PREFIX_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_INPUT_EMPTY_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_INPUT_FORMAT_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_LABEL_PROPS_DB_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_LABEL_PROPS_EMPTY_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_NG_METADATA_DB_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_PREFIX_MAPPING_DB_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
QE_PREFIX_MAPPING_UNKNOWN_ERR - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSErrorCodes
 
quality - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a named graph to its conflict resolution quality estimate.
QualityAssessmentConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Quality Assessment transformer configuration.
QualityAssessmentConfig() - Constructor for class cz.cuni.mff.odcleanstore.configuration.QualityAssessmentConfig
 
query - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
A query over the output webservice.
QueryException - Exception in cz.cuni.mff.odcleanstore.connection.exceptions
Exception thrown when a query over the database fails.
QueryException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.QueryException
Creates a new exception.
QueryException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.QueryException
Creates a new exception.
QueryException(String) - Constructor for exception cz.cuni.mff.odcleanstore.connection.exceptions.QueryException
Creates a new exception.
QueryExecutionConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Query-Execution configuration.
QueryExecutionConfig(Long, URI, JDBCConnectionCredentials) - Constructor for class cz.cuni.mff.odcleanstore.configuration.QueryExecutionConfig
 
queryMetadataGraphUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of named graph where metadata in the output are stored.
queryQARuleUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of URIs identifying a Quality Assessment rule.
queryResponse - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Class of resources describing a result of a query.
queryResultGraphUriInfix - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCSInternal
Infix of URIs of named graph where the result quads are placed

R

RDF - Class in cz.cuni.mff.odcleanstore.vocabulary
Definitions of RDF vocabulary.
RDFprefix - Class in cz.cuni.mff.odcleanstore.data
RDF prefix representation.
RDFprefix(String, String) - Constructor for class cz.cuni.mff.odcleanstore.data.RDFprefix
Creates a new instance.
RDFPrefixesLoader - Class in cz.cuni.mff.odcleanstore.shared
Common class for loading RDF prefixes from Virtuoso DB.
RDFPrefixesLoader - Class in cz.cuni.mff.odcleanstore.shared.util
Common class for loading RDF prefixes from Virtuoso DB.
RDFS - Class in cz.cuni.mff.odcleanstore.vocabulary
Definitions of RDFS vocabulary.
remove() - Method in class cz.cuni.mff.odcleanstore.shared.util.LimitedURIListBuilder
 
removeInitialBOMXml(String) - Static method in class cz.cuni.mff.odcleanstore.shared.util.FileUtils
 
renameGraph(String, String) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Rename graph in DB.DBA.RDF_QUAD.
result - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking an instance of odcs:QueryResponse to named graphs containing a result triple.
rollback() - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Revert changes to the last commit.
RollingFileAppender - Class in cz.cuni.mff.odcleanstore.log4j
Log4j Rolling file appender with switching output to different files.
RollingFileAppender() - Constructor for class cz.cuni.mff.odcleanstore.log4j.RollingFileAppender
The default constructor simply calls its parents constructor and mark as default appender for thread and child thread if default appender does not exist.

S

sameAs - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.OWL
 
satisfyDirectory(String) - Static method in class cz.cuni.mff.odcleanstore.shared.util.FileUtils
 
satisfyDirectory(String, String) - Static method in class cz.cuni.mff.odcleanstore.shared.util.FileUtils
 
score - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a named graph to its quality assessment score.
scoreTrace - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a named graph to its quality assessment score trace.
SerializationLanguage - Enum in cz.cuni.mff.odcleanstore.shared
Type of serialization of input data.
setNewLogFile(String) - Static method in class cz.cuni.mff.odcleanstore.log4j.RollingFileAppender
Set odcs log4j new RollingFileAppender for thread and its next child, previous RollingFileAppender is hidden.
setQueryTimeout(int) - Method in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Sets query timeout for all queries executed through this wrapper.
shutdown() - Method in interface cz.cuni.mff.odcleanstore.transformer.Transformer
Called when the instance of the transformer is no longer needed.
source - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
 
source - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.W3P
An Artifact has another Artifact as its source.
sourceGraph - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a query result triple (the named graph it is placed in, respectively) to named graphs the triple was selected or calculated from.
SparqlEndpointConnectionCredentials - Class in cz.cuni.mff.odcleanstore.connection
Encapsulates the connection coordinates of a SPARQL Endpoint.
SparqlEndpointConnectionCredentials(URL) - Constructor for class cz.cuni.mff.odcleanstore.connection.SparqlEndpointConnectionCredentials
Creates a new instance.
SparqlEndpointConnectionCredentials(URL, String, String) - Constructor for class cz.cuni.mff.odcleanstore.connection.SparqlEndpointConnectionCredentials
Creates a new instance.
stringFunction - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XPathFunctions
 
stringType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 

T

TableVersion - Enum in cz.cuni.mff.odcleanstore.data
Version of database tables.
TIME_UNIT_60 - Static variable in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Time unit 60.
timeType - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.XMLSchema
 
title - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.DC
A name given to the resource.
TMP_FILE_PREFIX - Static variable in class cz.cuni.mff.odcleanstore.data.GraphLoaderUtils
Prefix of temporary files' names.
toAscii(CharSequence) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Convert the given string to ASCII characters, removing diacritical marks.
toId() - Method in enum cz.cuni.mff.odcleanstore.model.EnumGraphState
 
toId() - Method in enum cz.cuni.mff.odcleanstore.model.EnumPipelineErrorType
 
toString() - Method in enum cz.cuni.mff.odcleanstore.shared.SerializationLanguage
 
toStringNullProof(Object) - Static method in class cz.cuni.mff.odcleanstore.shared.ODCSUtils
Converts an object or null refrence to a string (null is converted to the empty string).
totalResults - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Number of quads in a query result.
TransformationContext - Interface in cz.cuni.mff.odcleanstore.transformer
Context for a custom transformer.
TransformedGraph - Interface in cz.cuni.mff.odcleanstore.transformer
Container for all neccessary information about a transofmed graph for a custom transformer.
TransformedGraphException - Exception in cz.cuni.mff.odcleanstore.transformer
Exception thrown by TransformedGraphs during a named graph processing.
TransformedGraphException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformedGraphException
Constructs a new exception with the given cause.
TransformedGraphException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformedGraphException
Constructs a new exception with the given message and cause.
TransformedGraphException(String) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformedGraphException
Constructs a new exception with the given message.
Transformer - Interface in cz.cuni.mff.odcleanstore.transformer
Interface of a custom transformer.
TransformerException - Exception in cz.cuni.mff.odcleanstore.transformer
Exception thrown by Transformers during a named graph processing.
TransformerException(Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformerException
Constructs a new exception with the given cause.
TransformerException(String, Throwable) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformerException
Constructs a new exception with the given message and cause.
TransformerException(String) - Constructor for exception cz.cuni.mff.odcleanstore.transformer.TransformerException
Constructs a new exception with the given message.
transformGraph(TransformedGraph, TransformationContext) - Method in interface cz.cuni.mff.odcleanstore.transformer.Transformer
Transforms a graph.
TTL_FLAGS - Static variable in class cz.cuni.mff.odcleanstore.connection.VirtuosoConnectionWrapper
Flags for TTL import.
type - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.RDF
The subject is an instance of a class.

U

unicodeToAscii(String) - Static method in class cz.cuni.mff.odcleanstore.shared.util.FileUtils
Translates native string into ASCII code.
UniqueURIGenerator - Interface in cz.cuni.mff.odcleanstore.shared
Generator of URIs unique at least within each instance.
updateTag - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Update tag identifier for stored named graphs.
UUIDUniqueURIGenerator - Class in cz.cuni.mff.odcleanstore.shared.util
Generates unique URIs in format -.
UUIDUniqueURIGenerator(String) - Constructor for class cz.cuni.mff.odcleanstore.shared.util.UUIDUniqueURIGenerator
Crate a new instance generating URIs with the specified prefix.
UUIDUniqueURIGenerator - Class in cz.cuni.mff.odcleanstore.shared
Generates unique URIs in format -.
UUIDUniqueURIGenerator(String) - Constructor for class cz.cuni.mff.odcleanstore.shared.UUIDUniqueURIGenerator
Crate a new instance generating URIs with the specified prefix.

V

valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.configuration.ConfigGroup.EnumDbConnectionType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.connection.EnumLogLevel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.data.EnumDatabaseInstance
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.data.TableVersion
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.model.EnumGraphState
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.model.EnumPipelineErrorType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.shared.SerializationLanguage
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum cz.cuni.mff.odcleanstore.transformer.EnumTransformationType
Returns the enum constant of this type with the specified name.
values() - Static method in enum cz.cuni.mff.odcleanstore.configuration.ConfigGroup.EnumDbConnectionType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.connection.EnumLogLevel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.data.EnumDatabaseInstance
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.data.TableVersion
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.model.EnumGraphState
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.model.EnumPipelineErrorType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.shared.SerializationLanguage
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum cz.cuni.mff.odcleanstore.transformer.EnumTransformationType
Returns an array containing the constants of this enum type, in the order they are declared.
violatedQARule - Static variable in class cz.cuni.mff.odcleanstore.vocabulary.ODCS
Property linking a data graph to a Quality Assessment rule it violates.
VirtuosoConnectionWrapper - Class in cz.cuni.mff.odcleanstore.connection
A wrapper for SQL Connection to a Virtuoso database.

W

W3P - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions of W3p provenance model for the Web.
WebFrontendConfig - Class in cz.cuni.mff.odcleanstore.configuration
Encapsulates Web Frontend configuration.
WebFrontendConfig(JDBCConnectionCredentials, JDBCConnectionCredentials, String, String, String, String) - Constructor for class cz.cuni.mff.odcleanstore.configuration.WebFrontendConfig
 
WrappedResultSet - Class in cz.cuni.mff.odcleanstore.connection
Wrapper of ResultSet that extends support for null values, conversion to Node and Date and large results split to multiple result sets.

X

XMLSchema - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions for XMLSchema.
XPathFunctions - Class in cz.cuni.mff.odcleanstore.vocabulary
Vocabulary definitions for XPathFunctions.
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